Jérôme Waldispühl group @ McGill
Structural Bioinformatics & Citizen Science

Research

RNA Bioinformatics

We develop algorithms to predict RNA 3D structures and molecules binding them

Citizen Science

We develop crowd-computing games to analyze genomic data

Resources

Web servers, databases, and source code

Structural bioinformatics (RNA & Proteins)


BayesPairing

Prediction of RNA 3D modules

RNA-MoIP

Prediction of RNA 2.5D structures

aRNhAck

Prediction of RNA binding interfaces

IncaRNAtion

Sampling RNA sequences with target structure

CaRNAval

Catalog of RNA Recurrent Interaction Networks

ArchARNement

Reconstruction of ancestral RNA sequences

RNAmutants

Exploration of RNA sequence-structure maps

RNApyro

Error-correction of RNA sequencing data

SPARCS

Analysis of structural content of coding RNA

IncaRNAfbinv

Fragment-based design of RNA sequences

MateRNAl

Simulation of evolution of RNA populations

P3Fold

Prediction of protein folding routes

Fibrilizer

Analysis of polymorphic Amyloid fibrils

PartiFold

Prediction of transmembrane β-barrels

Human-Computing & Citizen science games


Phylo

Citizen science puzzle game for genomics

Colony B

Citizen science mobile app for microbiome

Market

A collaborative crowd-computing game

3DGB

Immersive exploration of 3D genomes

Publications

Journal articles, conference papers, book chapters and preprints

Team

Jérôme Waldispühl

Group leader

Elena Nazarova

Research Associate

Alexander Butyaev

Research Associate

Chris Drogaris

Programmer

Antoine Soulé

PhD student

Carlos Gonzalez Oliver

PhD student

Roman Sarrazin-Gendron

PhD Student

Hua-Ting Yao

PhD student

Yash Patel

M.Sc. student

Jacques Boitreaud

M.Sc. student


Alumni

Antoine Soulé, PhD (2012-2019)
Alexander Butyaev, PhD (2013-2019)
Vincent Mallet, M.Sc. (2018-2019)
Eric Zhang, M.Sc. (2016-2018)
Akash Singh, M.Sc. (2017-2018)
Mansha Imtiyaz, M.Sc. (2017-2018)
Eric Kissel, M.Sc. (2017-2018)
Ali Atiia, PhD (2012-2018)
David Becerra, PhD (2012-2017)
Atefeh Mohajeri, Postdoc (2015-2017)
Vladimir Reinharz, M.Sc. (2011-2012), PhD (2012-2016)
Olivier Tremblay-Savard, Postdoc (2013-2015)
Sriswetha Rajagopal, M.Sc. (2013-2015)
Mohamed Smaoui, M.Sc. (2010-2011), PhD (2011-2014)
Yang (Olivia) Zhang, M.Sc. (2012-2014)
Zheng Dai, B.Sc. (2015-2017)
Jason Yao, B.Sc. (2016-2017)
Daniel Kwak, B.Sc. (2010-2013)
Alfred Kam, B.Sc. (2010-2014)
Rudolf Lam, B.Sc. (2010-2011)
Gary Roumanis, B.Sc. (2010-2011)
Alexander Kawrykow, B.Sc. (2010-2011)
Solomon Shenker, B.Sc. (2010-2011)

Open Positions

We have multiple open positions at the PhD level. We are primarily looking for candidates with a strong theoretical background in computer science and software engineers. We may also consider biologists or biochemists with a solid experience in programming.

Before submitting your online application, we recommend you to contact the group leader. Describe your background and motivation to pursue graduate studies, and include your CV and transcripts in your e-mail.

Importantly, when you will fill your McGill online application form, provide the name of Jérôme Waldispühl in the list of preferred supervisors. This information is important to ensure a proper routing of your files.

Start your application now!

Contact

Write us or stop by to say hello!

Mail Us

3480 University Street, Room 318
McConnell Engineering Bldg
Montréal QC H3A 0E9

Mail Us

(E-mail) jerome.waldispuhl@mcgill.ca
(Phone) +1 514 398 5018

Visit Us

3630 University Street, Room 3106
Trottier Bldg
Montréal QC H3A 2B3

Sponsors & Partners